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Construction and characterization of an expressed sequenced tag library for the mosquito vector Armigeres subalbatus

机译:蚊媒亚基蚊的表达序列标签文库的构建与表征

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摘要

[[abstract]]Background: The mosquito, Armigeres subalbatus, mounts a distinctively robust innate immune response when infected with the nematode Brugia malayi, a causative agent of lymphatic filariasis. In order to mine the transcriptome for new insight into the cascade of events that takes place in response to infection in this mosquito, 6 cDNA libraries were generated from tissues of adult female mosquitoes subjected to immune-response activation treatments that lead to well-characterized responses, and from aging, naive mosquitoes. Expressed sequence tags (ESTs) from each library were produced, annotated, and subjected to comparative analyses. Results: Six libraries were constructed and used to generate 44,940 expressed sequence tags, of which 38,079 passed quality filters to be included in the annotation project and subsequent analyses. All of these sequences were collapsed into clusters resulting in 8,020 unique sequence clusters or singletons. EST clusters were annotated and curated manually within ASAP (A Systematic Annotation Package for Community Analysis of Genomes) web portal according to BLAST results from comparisons to Genbank, and the Anopheles gambiae and Drosophila melanogaster genome projects. Conclusion: The resulting dataset is the first of its kind for this mosquito vector and provides a basis for future studies of mosquito vectors regarding the cascade of events that occurs in response to infection, and thereby providing insight into vector competence and innate immunity.
机译:[[摘要]]背景:蚊子Armigeres subalbatus在感染线虫Brugia malayi(一种淋巴丝虫病的病原体)后,会表现出强烈的先天免疫反应。为了挖掘转录组,以便对在这种蚊​​子中感染后发生的级联事件有新的认识,从成年雌性蚊子的组织中产生了6个cDNA文库,这些组织经过了免疫应答激活处理,从而导致了特征明确的应答以及老化的幼稚蚊子。产生,注释每个文库的表达序列标签(EST),并进行比较分析。结果:构建了六个文库,并用于生成44,940个表达的序列标签,其中38,079个通过了质量过滤器,以包含在注释项目和后续分析中。所有这些序列都折叠成簇,从而产生8,020个唯一的序列簇或单例。根据与Genbank进行比较的BLAST结果,冈比亚按蚊和果蝇果蝇基因组计划的BLAST结果,在ASAP(基因组群落分析的系统注释包)网络门户中手动注释和管理EST簇。结论:所得的数据集是该灭蚊载体的第一个此类数据集,并为以后的灭蚊载体研究有关感染响应事件的级联提供了基础,从而提供了对载体能力和先天免疫力的了解。

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    Mayhew, GF;

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  • 年度 2010
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